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yabE [2019-08-15 12:57:43]
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yabE [2019-08-15 12:57:43]

similar to cell wall binding protein
locus
BSU_00400
pI
9.28
mw
47.55 kDa
protein length
437 aa Sequence Blast
gene length
1314 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.6|Cell wall/ other/ based on similarity]

    • Gene

    Coordinates
    48,629 → 49,942

    The protein

    [SW|Domains]

  • G5 domain (aa 236-316) (according to uniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]
    description
    [Pubmed|19047346]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|19047346], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • additional information

  • expression is negatively controlled by a cis-acting antisense RNA that is dependent on [protein|search|SigX] and [protein|search|SigM] [http://www.ncbi.nlm.nih.gov/sites/entrez/19047346 PubMed]
    • view in new tab

    additional information

  • the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]

    • Biological materials

    Mutant

  • MGNA-B905 (yabE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1904 NBRP B. subtilis, Japan]
  • BKE00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC
  • BKK00400 (Δ[gene|FEC200568646319DBFAD3A7E20AFA1CF5185EFB2|yabE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAGCTCAGTGTCCTCTT, downstream forward: _UP4_TAGTATATACTTATGTATTC

    • labs

  • [SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]

    • References

  • 19047346,26883633